3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11105

Details:

PFam ID : PF11105

PFam Domain Description : Arthropod cardioacceleratory peptide 2a

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 31

Average sequence length: 96.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11105	E2B4A4_9HYME_2_90	90.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11105	Q17NP9_AEDAE_2_144	100

Sequence based PCA Plot of the family - PF11105 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=40 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay