3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11104

Details:

PFam ID : PF11104

PFam Domain Description : Competence protein A

Number of Sequence in 50% Dataset : 180

Number of Sequence in Full Dataset : 401

Average sequence length: 310.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11104	Q6MMP1_BDEBA_107_456	71.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11104	D5X7M4_THEPJ_9_390	100

Sequence based PCA Plot of the family - PF11104 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=127 Length=8
Motif2 Start=261 Length=8
Motif3 Start=1 Length=11
Motif4 Start=280 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay