3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11093

Details:

PFam ID : PF11093

PFam Domain Description : Mitochondrial export protein Som1

Number of Sequence in 50% Dataset : 16

Number of Sequence in Full Dataset : 40

Average sequence length: 81.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11093	A6RGX0_AJECN_11_76	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11093	B2ADD1_PODAN_1_94	100

Sequence based PCA Plot of the family - PF11093 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=11
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=57 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay