3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11085

Details:

PFam ID : PF11085

PFam Domain Description : Conserved membrane protein YqhR

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 36

Average sequence length: 164.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11085	C0ZBX8_BREBN_11_170	20

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11085	Q8EQ26_OCEIH_1_173	100

Sequence based PCA Plot of the family - PF11085 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=98 Length=8
Motif3 Start=136 Length=8
Motif4 Start=27 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay