3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11074

Details:

PFam ID : PF11074

PFam Domain Description : Domain of unknown function(DUF2779)

Number of Sequence in 50% Dataset : 42

Number of Sequence in Full Dataset : 114

Average sequence length: 131.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11074	Q4DHC6_TRYCR_596_706	90.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11074	E8UH43_MYCFM_424_584	100

Sequence based PCA Plot of the family - PF11074 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=81 Length=8
Motif2 Start=179 Length=11
Motif3 Start=20 Length=11
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay