3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11052

Details:

PFam ID : PF11052

PFam Domain Description : Trans-sialidase of Trypanosoma hydrophobic C-terminal

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 231

Average sequence length: 24.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11052	Q4D2B1_TRYCR_76_99	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11052	E7LIA0_TRYCR_657_676	89

Sequence based PCA Plot of the family - PF11052 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=11
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay