3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11051

Details:

PFam ID : PF11051

PFam Domain Description : Mannosyltransferase putative

Number of Sequence in 50% Dataset : 99

Number of Sequence in Full Dataset : 321

Average sequence length: 242.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11051	D4ZZV6_SPIPL_5_123	84.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11051	Q757U4_ASHGO_178_475	100

Sequence based PCA Plot of the family - PF11051 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=317 Length=8
Motif2 Start=1 Length=8
Motif3 Start=29 Length=11
Motif4 Start=269 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay