3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11050

Details:

PFam ID : PF11050

PFam Domain Description : Virus envelope protein E26

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 11

Average sequence length: 154.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11050	C4SWD9_YERIN_46_105	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11050	A1YR70_9ABAC_1_209	100

Sequence based PCA Plot of the family - PF11050 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay