3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11049

Details:

PFam ID : PF11049

PFam Domain Description : Glycoprotein K1 of Kaposi's sarcoma-associated herpes virus

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 132

Average sequence length: 65.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11049	C4SWD9_YERIN_46_105	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11049	C9EIJ4_HHV8_1_40	98.4

Sequence based PCA Plot of the family - PF11049 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=27 Length=14
Motif2 Start=18 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay