3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11040

Details:

PFam ID : PF11040

PFam Domain Description : Dispersed gene family protein 1 of Trypanosoma cruzi C-terminus

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 135

Average sequence length: 80.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11040	E7KXP4_TRYCR_332_406	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11040	Q4CS24_TRYCR_2272_2314	99.2

Sequence based PCA Plot of the family - PF11040 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay