3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11038

Details:

PFam ID : PF11038

PFam Domain Description : Dispersed gene family protein 1 of Trypanosoma cruzi region 5

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 15

Average sequence length: 197.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11038	E7KXP4_TRYCR_332_406	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11038	Q4CNW2_TRYCR_1382_1519	100

Sequence based PCA Plot of the family - PF11038 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=26 Length=8
Motif4 Start=51 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay