3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11036

Details:

PFam ID : PF11036

PFam Domain Description : Virulence promoting factor

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 6

Average sequence length: 35.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11036	A6ML41_CALJA_1_94	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11036	F1ZM32_ECOLX_1_43	100

Sequence based PCA Plot of the family - PF11036 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay