3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11033

Details:

PFam ID : PF11033

PFam Domain Description : Competence protein J (ComJ)

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 19

Average sequence length: 118.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11033	B1M1Y6_METRJ_2_121	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11033	D5DKI2_BACMD_1_135	100

Sequence based PCA Plot of the family - PF11033 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=18
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay