3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11032

Details:

PFam ID : PF11032

PFam Domain Description : Apolipoprotein M (ApoM)

Number of Sequence in 50% Dataset : 13

Number of Sequence in Full Dataset : 20

Average sequence length: 162.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11032	B0S725_DANRE_26_212	83.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11032	Q4RUP8_TETNG_1_192	100

Sequence based PCA Plot of the family - PF11032 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=18
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay