3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11030

Details:

PFam ID : PF11030

PFam Domain Description : Nucleocapsid protein N

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 4

Average sequence length: 50.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11030	Q65710_BEV_1_20	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11030	Q70KL8_9NIDO_1_163	100

Sequence based PCA Plot of the family - PF11030 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay