3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11025

Details:

PFam ID : PF11025

PFam Domain Description : Glycoprotein GP40 of Cryptosporidium

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 39

Average sequence length: 110.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11025	B5LQL3_CRYHO_123_150	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11025	Q8N0K6_9CRYT_90_188	94.7

Sequence based PCA Plot of the family - PF11025 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay