3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11004

Details:

PFam ID : PF11004

PFam Domain Description : 3-deoxy-D-manno-oct-2-ulosonic acid (Kdo) hydroxylase

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 44

Average sequence length: 275.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11004	Q0A4T9_ALHEH_8_306	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11004	Q0A4T9_ALHEH_8_306	100

Sequence based PCA Plot of the family - PF11004 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=266 Length=8
Motif2 Start=246 Length=17
Motif3 Start=128 Length=11
Motif4 Start=159 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay