3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10996

Details:

PFam ID : PF10996

PFam Domain Description : Beta-Casp domain

Number of Sequence in 50% Dataset : 133

Number of Sequence in Full Dataset : 975

Average sequence length: 124.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10996	C6WZ13_METML_342_500	55.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10996	Q5KIP3_CRYNE_277_436	100

Sequence based PCA Plot of the family - PF10996 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=97 Length=8
Motif2 Start=119 Length=8
Motif3 Start=1 Length=8
Motif4 Start=15 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay