3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10938

Details:

PFam ID : PF10938

PFam Domain Description : YfdX protein

Number of Sequence in 50% Dataset : 34

Number of Sequence in Full Dataset : 54

Average sequence length: 144.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10938	D7Y6N9_ECOLX_1_60	81.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10938	B1Z8A0_METPB_55_236	100

Sequence based PCA Plot of the family - PF10938 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay