Home Browse Search Download Help Group

3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10865
Details:

PFam ID : PF10865

PFam Domain Description : Domain of unknown function (DUF2703)

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 36

Average sequence length: 109.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF10865Q47CT8_DECAR_4_6269.2
HMMER Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF10865A3CRF8_METMJ_5_123100
Sequence based PCA Plot of the family - PF10865 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=24 Length=8
Motif2 Start=1 Length=8
Motif3 Start=59 Length=8
Motif4 Start=15 Length=8
Download PSSM/HMM Models/Alignment:
Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay