3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10816

Details:

PFam ID : PF10816

PFam Domain Description : Domain of unknown function (DUF2760)

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 66

Average sequence length: 124.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10816	Q1K496_DESAC_77_206	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10816	Q1K496_DESAC_77_206	100

Sequence based PCA Plot of the family - PF10816 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=74 Length=11
Motif2 Start=37 Length=11
Motif3 Start=19 Length=8
Motif4 Start=91 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay