3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10798

Details:

PFam ID : PF10798

PFam Domain Description : Biofilm development protein YmgB/AriR

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 70

Average sequence length: 55.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10798	D1RR12_SEROD_16_72	20

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10798	E9YT59_ECOLX_26_86	98.5

Sequence based PCA Plot of the family - PF10798 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=20 Length=8
Motif4 Start=44 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay