3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10793

Details:

PFam ID : PF10793

PFam Domain Description : Gloverin-like protein

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 16

Average sequence length: 129.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10793	E5D603_HELAM_1_109	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10793	E5D603_HELAM_1_109	93.3

Sequence based PCA Plot of the family - PF10793 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=18
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay