3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10785

Details:

PFam ID : PF10785

PFam Domain Description : NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit

Number of Sequence in 50% Dataset : 19

Number of Sequence in Full Dataset : 78

Average sequence length: 83.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10785	A0D1Q8_PARTE_33_118	72.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10785	A0D1Q8_PARTE_33_118	100

Sequence based PCA Plot of the family - PF10785 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=71 Length=8
Motif2 Start=2 Length=30

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay