3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10779

Details:

PFam ID : PF10779

PFam Domain Description : Haemolysin XhlA

Number of Sequence in 50% Dataset : 25

Number of Sequence in Full Dataset : 105

Average sequence length: 69.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10779	A5MYJ3_CLOK5_14_84	20.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10779	E4QE31_CALH1_7_83	99.0

Sequence based PCA Plot of the family - PF10779 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay