3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10775

Details:

PFam ID : PF10775

PFam Domain Description : ATP synthase complex subunit h

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 56

Average sequence length: 67.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10775	A4TFU8_MYCGI_220_331	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10775	E3K970_PUCGT_23_93	100

Sequence based PCA Plot of the family - PF10775 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=31 Length=8
Motif2 Start=10 Length=11
Motif3 Start=1 Length=8
Motif4 Start=22 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay