3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10757

Details:

PFam ID : PF10757

PFam Domain Description : Biofilm formation regulator YbaJ

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 31

Average sequence length: 111.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10757	D6AQJ8_STRFL_66_134	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10757	E9CQ51_9ENTR_1_88	96.6

Sequence based PCA Plot of the family - PF10757 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=33
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay