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3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10744
Details:

PFam ID : PF10744

PFam Domain Description : Mediator of RNA polymerase II transcription subunit 1

Number of Sequence in 50% Dataset : 60

Number of Sequence in Full Dataset : 113

Average sequence length: 340.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF10744A4RJI2_MAGO7_399_56064.4
HMMER Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF10744A7EYL3_SCLS1_110_53394.6
Sequence based PCA Plot of the family - PF10744 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=75 Length=8
Motif2 Start=274 Length=8
Motif3 Start=173 Length=8
Motif4 Start=30 Length=8
Download PSSM/HMM Models/Alignment:
Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay