3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10744 Details: PFam ID : PF10744 PFam Domain Description : Mediator of RNA polymerase II transcription subunit 1 Number of Sequence in 50% Dataset : 60 Number of Sequence in Full Dataset : 113 Average sequence length: 340.6 Pairwise Identity of Sequence in 50% Dataset : 31.3 FASSM Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF10744A4RJI2_MAGO7_399_56064.4 HMMER Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF10744A7EYL3_SCLS1_110_53394.6 Sequence based PCA Plot of the family - PF10744 : BRP of Green color is by FASSM and of Red color is by HMMER PSIMOT-Motifs Extracted using PSIMOT:There are 4 motifsMotif1 Start=75 Length=8Motif2 Start=274 Length=8Motif3 Start=173 Length=8Motif4 Start=30 Length=8 Download PSSM/HMM Models/Alignment:Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay
PFam ID : PF10744
PFam Domain Description : Mediator of RNA polymerase II transcription subunit 1
Number of Sequence in 50% Dataset : 60
Number of Sequence in Full Dataset : 113
Average sequence length: 340.6
Pairwise Identity of Sequence in 50% Dataset : 31.3
BRP of Green color is by FASSM and of Red color is by HMMER