3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10729

Details:

PFam ID : PF10729

PFam Domain Description : Cell division activator CedA

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 12

Average sequence length: 70.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10729	C9Y2M7_CROTZ_1_76	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10729	C9Y2M7_CROTZ_1_76	100

Sequence based PCA Plot of the family - PF10729 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=34 Length=8
Motif2 Start=16 Length=17
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay