3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10728

Details:

PFam ID : PF10728

PFam Domain Description : Domain of unknown function (DUF2520)

Number of Sequence in 50% Dataset : 89

Number of Sequence in Full Dataset : 320

Average sequence length: 128.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10728	D4VN64_9BACE_132_201	94.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10728	B1VHK4_CORU7_138_299	100

Sequence based PCA Plot of the family - PF10728 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=11 Length=8
Motif2 Start=2 Length=8
Motif3 Start=84 Length=8
Motif4 Start=35 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay