3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10719

Details:

PFam ID : PF10719

PFam Domain Description : Late competence development protein ComFB

Number of Sequence in 50% Dataset : 48

Number of Sequence in Full Dataset : 184

Average sequence length: 82.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10719	E9S4E8_TREDE_3_95	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10719	E9S4E8_TREDE_3_95	100

Sequence based PCA Plot of the family - PF10719 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=20 Length=8
Motif2 Start=11 Length=8
Motif3 Start=44 Length=8
Motif4 Start=2 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay