3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10718 Details: PFam ID : PF10718 PFam Domain Description : Hypothetical chloroplast protein Ycf34 Number of Sequence in 50% Dataset : 8 Number of Sequence in Full Dataset : 55 Average sequence length: 75.3 Pairwise Identity of Sequence in 50% Dataset : 31.3 FASSM Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF10718B8C0H7_THAPS_1_83100 HMMER Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF10718B8C0H7_THAPS_1_83100 Sequence based PCA Plot of the family - PF10718 : BRP of Green color is by FASSM and of Red color is by HMMER PSIMOT-Motifs Extracted using PSIMOT:There are 3 motifsMotif1 Start=13 Length=18Motif2 Start=61 Length=11Motif3 Start=1 Length=8 Download PSSM/HMM Models/Alignment:Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay
PFam ID : PF10718
PFam Domain Description : Hypothetical chloroplast protein Ycf34
Number of Sequence in 50% Dataset : 8
Number of Sequence in Full Dataset : 55
Average sequence length: 75.3
Pairwise Identity of Sequence in 50% Dataset : 31.3
BRP of Green color is by FASSM and of Red color is by HMMER