3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10711

Details:

PFam ID : PF10711

PFam Domain Description : Hypothetical protein (DUF2513)

Number of Sequence in 50% Dataset : 64

Number of Sequence in Full Dataset : 82

Average sequence length: 100.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10711	D3LCK7_OENOE_2_115	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10711	D5WNM3_BURSC_2_122	100

Sequence based PCA Plot of the family - PF10711 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=17
Motif2 Start=33 Length=11
Motif3 Start=53 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay