3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10706

Details:

PFam ID : PF10706

PFam Domain Description : Aminoglycoside-2''-adenylyltransferase

Number of Sequence in 50% Dataset : 22

Number of Sequence in Full Dataset : 55

Average sequence length: 110.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10706	C6W2B3_DYAFD_17_184	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10706	C9WIW3_CLOPE_2_97	100

Sequence based PCA Plot of the family - PF10706 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=40 Length=8
Motif2 Start=31 Length=8
Motif3 Start=22 Length=8
Motif4 Start=5 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay