3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10681

Details:

PFam ID : PF10681

PFam Domain Description : Chaperone for protein-folding within the ER, fungal

Number of Sequence in 50% Dataset : 13

Number of Sequence in Full Dataset : 67

Average sequence length: 195.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10681	C4JFU4_UNCRE_145_262	83.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10681	B0CV03_LACBS_27_208	100

Sequence based PCA Plot of the family - PF10681 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=3 Length=8
Motif2 Start=65 Length=8
Motif3 Start=14 Length=8
Motif4 Start=145 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay