3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10671

Details:

PFam ID : PF10671

PFam Domain Description : Toxin co-regulated pilus biosynthesis protein Q

Number of Sequence in 50% Dataset : 57

Number of Sequence in Full Dataset : 117

Average sequence length: 84.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10671	A1VV35_POLNA_107_203	96.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10671	A4JVG3_BURVG_120_218	98.2

Sequence based PCA Plot of the family - PF10671 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=28
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay