3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10670

Details:

PFam ID : PF10670

PFam Domain Description : Domain of unknown function (DUF4198)

Number of Sequence in 50% Dataset : 155

Number of Sequence in Full Dataset : 434

Average sequence length: 210.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10670	A3IFW2_9BACI_1_41	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10670	Q21G95_SACD2_36_301	100

Sequence based PCA Plot of the family - PF10670 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=16 Length=8
Motif3 Start=29 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay