3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10662

Details:

PFam ID : PF10662

PFam Domain Description : Ethanolamine utilisation - propanediol utilisation

Number of Sequence in 50% Dataset : 38

Number of Sequence in Full Dataset : 135

Average sequence length: 134.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10662	D2KVA4_STREQ_2_142	81.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10662	B9DWI3_CLOK1_1_148	100

Sequence based PCA Plot of the family - PF10662 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=98 Length=8
Motif2 Start=1 Length=18
Motif3 Start=47 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay