3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10660

Details:

PFam ID : PF10660

PFam Domain Description : Iron-containing outer mitochondrial membrane protein N-terminus

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 44

Average sequence length: 54.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10660	B0WWX0_CULQU_1_31	20

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10660	CID2B_BRAFL_1_64	100

Sequence based PCA Plot of the family - PF10660 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay