3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10659

Details:

PFam ID : PF10659

PFam Domain Description : Trypanosome variant surface glycoprotein C-terminal domain

Number of Sequence in 50% Dataset : 39

Number of Sequence in Full Dataset : 201

Average sequence length: 95.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10659	Q38G13_9TRYP_393_448	52.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10659	Q580P7_9TRYP_411_508	98

Sequence based PCA Plot of the family - PF10659 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay