3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10651

Details:

PFam ID : PF10651

PFam Domain Description : Domain of unknown function (DUF2479)

Number of Sequence in 50% Dataset : 53

Number of Sequence in Full Dataset : 138

Average sequence length: 157.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10651	B1KTU2_CLOBM_10_160	28.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10651	C2FD12_LACPA_5_171	100

Sequence based PCA Plot of the family - PF10651 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=36 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=27 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay