3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10648

Details:

PFam ID : PF10648

PFam Domain Description : Immunoglobulin-like domain of bacterial spore germination

Number of Sequence in 50% Dataset : 26

Number of Sequence in Full Dataset : 43

Average sequence length: 85.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10648	C8VZ09_DESAS_186_277	16

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10648	A9B751_HERA2_182_272	100

Sequence based PCA Plot of the family - PF10648 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay