3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10647

Details:

PFam ID : PF10647

PFam Domain Description : Lipoprotein LpqB beta-propeller domain

Number of Sequence in 50% Dataset : 95

Number of Sequence in Full Dataset : 150

Average sequence length: 237.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10647	C0BVF7_9BIFI_335_576	91.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10647	D0WPH3_9ACTO_223_559	100

Sequence based PCA Plot of the family - PF10647 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=11
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=122 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay