3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10645

Details:

PFam ID : PF10645

PFam Domain Description : Carbohydrate binding

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 17

Average sequence length: 48.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10645	D5GF49_TUBMM_31_75	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10645	D5GJB9_TUBMM_86_134	100

Sequence based PCA Plot of the family - PF10645 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=8 Length=37

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay