3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10637

Details:

PFam ID : PF10637

PFam Domain Description : Oxoglutarate and iron-dependent oxygenase degradation C-term

Number of Sequence in 50% Dataset : 43

Number of Sequence in Full Dataset : 116

Average sequence length: 276.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10637	E9INA5_SOLIN_243_390	95.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10637	D7G882_ECTSI_20_380	100

Sequence based PCA Plot of the family - PF10637 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=113 Length=8
Motif3 Start=5 Length=8
Motif4 Start=60 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay