3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10636

Details:

PFam ID : PF10636

PFam Domain Description : Hemin uptake protein hemP

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 159

Average sequence length: 37.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10636	E6J7F8_9ACTO_133_288	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10636	B5KC78_9RHOB_1_30	99.3

Sequence based PCA Plot of the family - PF10636 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=15 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay