3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10635

Details:

PFam ID : PF10635

PFam Domain Description : DisA bacterial checkpoint controller linker region

Number of Sequence in 50% Dataset : 21

Number of Sequence in Full Dataset : 168

Average sequence length: 144.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10635	E6J7F8_9ACTO_133_288	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10635	E6J7F8_9ACTO_133_288	100

Sequence based PCA Plot of the family - PF10635 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=36 Length=11
Motif2 Start=78 Length=8
Motif3 Start=12 Length=11
Motif4 Start=69 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay