3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10634

Details:

PFam ID : PF10634

PFam Domain Description : Fe2+ transport protein

Number of Sequence in 50% Dataset : 17

Number of Sequence in Full Dataset : 109

Average sequence length: 146.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10634	Q5V747_HALMA_58_188	93.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10634	Q5V747_HALMA_58_188	100

Sequence based PCA Plot of the family - PF10634 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=70 Length=8
Motif3 Start=37 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay