3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10633

Details:

PFam ID : PF10633

PFam Domain Description : NPCBM-associated, NEW3 domain of alpha-galactosidase

Number of Sequence in 50% Dataset : 153

Number of Sequence in Full Dataset : 305

Average sequence length: 77.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10633	B7A9G2_THEAQ_42_121	88.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10633	F0LKB6_THEBM_596_686	100

Sequence based PCA Plot of the family - PF10633 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay