3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10628

Details:

PFam ID : PF10628

PFam Domain Description : Outer spore coat protein E (CotE)

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 40

Average sequence length: 172.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10628	C0ZEZ6_BREBN_6_186	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10628	C0ZEZ6_BREBN_6_186	100

Sequence based PCA Plot of the family - PF10628 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=6 Length=17
Motif2 Start=37 Length=8
Motif3 Start=61 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay